| Stage | Agent | Special Agent |
Perfect Agent |
| dataDyne Central - Defection | 20:00 | 20:00 | 20:00 |
| dataDyne Research - Investigation | 20:00 | 20:00 | 4:45 |
| dataDyne Central - Extraction | 1:49 | 3:41 | 4:53 |
| Carrington Villa - Hostage One | 1:20 | 2:47 | 4:28 |
| Chicago - Stealth | 0:28 | 0:44 | 1:04 |
| G5 Building - Reconnaissance | 20:00 | 20:00 | 9:17 |
| Area 51 - Infiltration | 1:35 | 11:52 | 20:00 |
| Area 51 - Rescue | 20:00 | 2:57 | 4:43 |
| Area 51 - Escape | 2:39 | 5:13 | N/A |
| Air Base - Espionage | 1:27 | 2:04 | 3:12 |
| Air Force One - Antiterrorism | 1:00 | 1:42 | 2:15 |
| Crash Site - Confrontation | 20:00 | 20:00 | 20:00 |
| Pelagic II - Exploration | 20:00 | 20:00 | 20:00 |
| Deep Sea - Nullify Threat | 20:00 | 4:49 | 4:40 |
| Carrington Institute - Defense | 0:56 | 20:00 | 20:00 |
| Attack Ship - Covert Assault | 20:00 | 20:00 | 20:00 |
| Skedar Ruins - Battle Shrine | 20:00 | 20:00 | 20:00 |
| Mr. Blonde's Revenge | 2:41 | 2:58 | 3:24 |
| Maian S.O.S. | 2:57 | 3:22 | 3:56 |
| WAR! | 20:00 | 20:00 | 20:00 |
| The Duel | 20:00 | 20:00 | 20:00 |