| Stage | Agent | Special Agent | Perfect Agent |
| dataDyne Central - Defection | 20:00 | 20:00 | 20:00 |
| dataDyne Research - Investigation | 1:32 | 20:00 | 20:00 |
| dataDyne Central - Extraction | 1:01 | 20:00 | 20:00 |
| Carrington Villa - Hostage One | 1:06 | 20:00 | 20:00 |
| Chicago - Stealth | 0:46 | 20:00 | 20:00 |
| G5 Building - Reconnaissance | 20:00 | 20:00 | 20:00 |
| Area 51 - Infiltration | 1:10 | 20:00 | 2:01 |
| Area 51 - Rescue | 1:37 | 20:00 | 20:00 |
| Area 51 - Escape | 2:11 | 20:00 | 20:00 |
| Air Base - Espionage | 1:22 | 20:00 | 20:00 |
| Air Force One - Antiterrorism | 20:00 | 20:00 | 20:00 |
| Crash Site - Confrontation | 0:55 | 20:00 | 20:00 |
| Pelagic II - Exploration | 0:50 | 20:00 | 20:00 |
| Deep Sea - Nullify Threat | 20:00 | 20:00 | 20:00 |
| Carrington Institute - Defense | 0:42 | 20:00 | 20:00 |
| Attack Ship - Covert Assault | 2:13 | 20:00 | 20:00 |
| Skedar Ruins - Battle Shrine | 20:00 | 20:00 | 20:00 |
| Mr. Blonde's Revenge | 20:00 | 20:00 | 20:00 |
| Maian SOS | 20:00 | 20:00 | 20:00 |
| WAR! | 20:00 | 0:45 | 20:00 |
| The Duel | 0:00 | 0:00 | 0:00 |
| Total Time | ?? | ?? | ?? |